SWALO

Photo: Iftekhar Naim

SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing.

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SWALO is described in the paper
Atif Rahman and Lior Pachter, SWALO: scaffolding with assembly likelihood optimization, submitted.

Git repository of SWALO is at https://github.com/atifrahman/SWALO.

Please email your questions, comments, suggestions, and bug reports to atif.bd@gmail.com.